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Error communicating with device

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I have started getting this error message. Not sure if it's from my Kobo Aura, or from the new update, but I only got it this morning after updating. Of course I didn't try before the update so hard to tell

Spoiler:
Code:

calibre, version 2.60.0
ERROR: Error: Error communicating with device

database disk image is malformed

Traceback (most recent call last):
  File "site-packages\calibre\gui2\device.py", line 87, in run
  File "site-packages\calibre\gui2\device.py", line 533, in _sync_booklists
  File "site-packages\calibre\devices\kobo\driver.py", line 935, in sync_booklists
  File "site-packages\calibre\devices\kobo\driver.py", line 2336, in update_device_database_collections
  File "site-packages\calibre\devices\kobo\driver.py", line 2592, in delete_empty_bookshelves
DatabaseError: database disk image is malformed


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